Commands

SGE	Slurm	Description
qsub script_file	sbatch script_file	Submit a job from script_file
qdel 123	scancel 123	Cancel job 123
qstat	squeue	List user's pending and running jobs
qhost -q	sinfo sinfo -s	Cluster status with partition (queue) list With '-s' a summarised partition list, which is shorter and simpler to interpret.

Job Specification

SGE	Slurm	Description
#$	#SBATCH	Scheduler directive
-q queue_name	-p queue_name	Queue to 'queue_name'
-pe 64	-n 64	Processor count of 64
-l h_rt=[ss]	-t [minutes] or -t [days-hh:mm:ss]	Max wall run time
-o file_name	-o file_name	STDOUT output file
-e file_name	-e file_name	STDERR output file
-J job_name	--job-name=job_name	Job name
-l exclusive	--exclusive	Exclusive node usage for this job - i.e. no other jobs on same nodes
-l mem_free=128M or -l mem_free=1G	--mem-per-cpu=128M or --mem-per-cpu=1G	Memory requirement
Set by parallel environment config	--tasks-per-node=16	Processes per node
-P proj_code	--account=proj_code	Project account to charge job to
-t "[array_spec]"	--array=array_spec	Job array declaration

Job Environment Variables

SGE	Slurm	Description
$JOBID	$SLURM_JOBID	Job ID
$SGE_O_WORKDIR	$SLURM_SUBMIT_DIR	Submit directory
$JOBID	$SLURM_ARRAY_JOB_ID	Job Array Parent
$SGE_TASK_ID	$SLURM_ARRAY_TASK_ID	Job Array Index
$SGE_O_HOST	$SLURM_SUBMIT_HOST	Submission Host
cat $PE_HOSTLIST (this is a file)	$SLURM_JOB_NODELIST	Allocated compute nodes
$NSLOTS	$SLURM_NTASKS (mpirun can automatically pick this up from Slurm, it does not need to be specified)	Number of processors allocated
$QUEUE	$SLURM_JOB_PARTITION	Queue

Much more detail available in the Slurm documentation.